Basic Information | |
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Taxon OID | 3300027806 Open in IMG/M |
Scaffold ID | Ga0209985_10000587 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38970 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (50.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005206 | Metagenome / Metatranscriptome | 408 | Y |
F011216 | Metagenome / Metatranscriptome | 293 | Y |
F016254 | Metagenome | 248 | Y |
F016961 | Metagenome / Metatranscriptome | 243 | N |
F087086 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209985_1000058722 | F005206 | N/A | MKFKVDRSQAEVKPFPGPGEYTVVIHSTKDEGLDKNGNPVVVLRYKGAGGEVISDRFTLKDTMMWRLQALISATEADIKDGDEFDFSIGGAFQRFLQGFVGLAMGIVIEEEKYTDKNGAEQTALRVRRMKKLPSDNDI |
Ga0209985_1000058724 | F016961 | AGGA | MRDNMNTALTIVSMAVLMPLCVIAGIYVGHTLTIKSQKTTTNEQSNRNRM |
Ga0209985_1000058733 | F011216 | AGGAGG | VNHLVNANKKVSKTPRTDRQPFVTVAFTEFVKAGFARQLERQLAAANKRIKELEAKVDELNEFKKWLEGR |
Ga0209985_1000058745 | F087086 | AGGAGG | VKYRLGFSIVASFSGEHPDLCEWHPCETTLPDVLREWPGLPVEPSEPFDSEYNYLAKEGSIPRAILDRLDNVRGETRFQICRKLKEKFGREAFWACISDVQMSGIFDRETAFKFLDSIGAGFETTQTMGTIGGPLGHWCPDFAFNVQSQVLISSIRLTPVLCTVSESGELEPVRPPSEWQWERFADLFKRFDCFDLARQGRAIDAH |
Ga0209985_1000058748 | F016254 | N/A | MAKGKETAVIQVERGEKPRLRAKPEKGTKMRLSDDVKRKALEAAQYGMPIDRIAILCGFPAGNQTQWARWINANPAFQMELDQARAEGELTLQRRIINGEANWQSAGWLLERTRGYVARAQLEHTGKGGKELSVSGALLGAFGGSK |
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