NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10000587

Scaffold Ga0209985_10000587


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10000587 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38970
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005206Metagenome / Metatranscriptome408Y
F011216Metagenome / Metatranscriptome293Y
F016254Metagenome248Y
F016961Metagenome / Metatranscriptome243N
F087086Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209985_1000058722F005206N/AMKFKVDRSQAEVKPFPGPGEYTVVIHSTKDEGLDKNGNPVVVLRYKGAGGEVISDRFTLKDTMMWRLQALISATEADIKDGDEFDFSIGGAFQRFLQGFVGLAMGIVIEEEKYTDKNGAEQTALRVRRMKKLPSDNDI
Ga0209985_1000058724F016961AGGAMRDNMNTALTIVSMAVLMPLCVIAGIYVGHTLTIKSQKTTTNEQSNRNRM
Ga0209985_1000058733F011216AGGAGGVNHLVNANKKVSKTPRTDRQPFVTVAFTEFVKAGFARQLERQLAAANKRIKELEAKVDELNEFKKWLEGR
Ga0209985_1000058745F087086AGGAGGVKYRLGFSIVASFSGEHPDLCEWHPCETTLPDVLREWPGLPVEPSEPFDSEYNYLAKEGSIPRAILDRLDNVRGETRFQICRKLKEKFGREAFWACISDVQMSGIFDRETAFKFLDSIGAGFETTQTMGTIGGPLGHWCPDFAFNVQSQVLISSIRLTPVLCTVSESGELEPVRPPSEWQWERFADLFKRFDCFDLARQGRAIDAH
Ga0209985_1000058748F016254N/AMAKGKETAVIQVERGEKPRLRAKPEKGTKMRLSDDVKRKALEAAQYGMPIDRIAILCGFPAGNQTQWARWINANPAFQMELDQARAEGELTLQRRIINGEANWQSAGWLLERTRGYVARAQLEHTGKGGKELSVSGALLGAFGGSK

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