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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027806 Open in IMG/M |
| Scaffold ID | Ga0209985_10000587 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38970 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005206 | Metagenome / Metatranscriptome | 408 | Y |
| F011216 | Metagenome / Metatranscriptome | 293 | Y |
| F016254 | Metagenome | 248 | Y |
| F016961 | Metagenome / Metatranscriptome | 243 | N |
| F087086 | Metagenome / Metatranscriptome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209985_1000058722 | F005206 | N/A | MKFKVDRSQAEVKPFPGPGEYTVVIHSTKDEGLDKNGNPVVVLRYKGAGGEVISDRFTLKDTMMWRLQALISATEADIKDGDEFDFSIGGAFQRFLQGFVGLAMGIVIEEEKYTDKNGAEQTALRVRRMKKLPSDNDI |
| Ga0209985_1000058724 | F016961 | AGGA | MRDNMNTALTIVSMAVLMPLCVIAGIYVGHTLTIKSQKTTTNEQSNRNRM |
| Ga0209985_1000058733 | F011216 | AGGAGG | VNHLVNANKKVSKTPRTDRQPFVTVAFTEFVKAGFARQLERQLAAANKRIKELEAKVDELNEFKKWLEGR |
| Ga0209985_1000058745 | F087086 | AGGAGG | VKYRLGFSIVASFSGEHPDLCEWHPCETTLPDVLREWPGLPVEPSEPFDSEYNYLAKEGSIPRAILDRLDNVRGETRFQICRKLKEKFGREAFWACISDVQMSGIFDRETAFKFLDSIGAGFETTQTMGTIGGPLGHWCPDFAFNVQSQVLISSIRLTPVLCTVSESGELEPVRPPSEWQWERFADLFKRFDCFDLARQGRAIDAH |
| Ga0209985_1000058748 | F016254 | N/A | MAKGKETAVIQVERGEKPRLRAKPEKGTKMRLSDDVKRKALEAAQYGMPIDRIAILCGFPAGNQTQWARWINANPAFQMELDQARAEGELTLQRRIINGEANWQSAGWLLERTRGYVARAQLEHTGKGGKELSVSGALLGAFGGSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |