NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10013220

Scaffold Ga0209229_10013220


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10013220 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3510
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F005479Metagenome / Metatranscriptome399Y
F036144Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100132203F005479N/AMPELINTFQALKKKEHDERKFQASLKGVEIGEYEEDKKGGSSFEDIQLRAAGVNATSNDVVSLQGNFAAQAGFGIGAGLGYSKE
Ga0209229_100132206F000258GGAGGVTANYKLDAMLELRKYLWNELSTRGIFDQENYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQIMFTLYSTDVSEINEIRNYMTDEFRRMDESARDINKWKALSNKFKFHSVWVADISPTAPSEELQGFFSAEVILEIKYSRITDGTGRFL
Ga0209229_100132207F036144N/ARNQFTLAHSRFFSGRLVSDSIKRSGFQRIFNSGITKALRVPANIKKVQYSFTPNTIRSQADAALSMSFGGAM

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