Scaffold Ga0209229_10012897

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10012897
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3557
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F077297	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100128975	F047677	AGAAG	MKWLKSVFSNESDASSKRVASILALLVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFTKKKSNDEGSN
Ga0209229_100128976	F077297	N/A	MTKDQIKGAIVIAVAITICIIIQTLYIRIKQDEKTIEGYERRADRATKVIDSLEATNVQRMLQIEELSEELERNKERYEANINAIDSLDRNGLRRAMHALLAELAGERYPGQSND
Ga0209229_100128977	F070109	AGGA	LLKLKAERDYLKTQFITLSKSDSISAIVIKDQQKSIDAWALTNEKTSQQLVKSQEELYKEAARKEAWRSTALIGIPISFIGGIIFTIFF