Scaffold Ga0209229_10012657

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10012657
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3589
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017134	Metagenome / Metatranscriptome	242	Y
F021757	Metagenome	217	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100126571	F021757	GGA	MLSKKYYIATAEILSSYKDLIGDEFTYHDLVEDFAGMFAEDNLLFDAQKFVDACNK
Ga0209229_1001265712	F017134	AGAAGG	MELFTVACLNYEICGAEETFDSVEEYEIYGDDYVCAECYADEEYNFFETVGWSDSDALASAGHGMDEDY
Ga0209229_100126574	F048982	GAGG	MTSIELQDVLKTCRQIRGNDYDSGSHYLLGYLWANTSDKEKMRIAKLFANDLKELAEKEL