Scaffold Ga0209229_10003449

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10003449
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6553
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000344910	F007748	AGTAG	VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIQTLEAENATLKSQR
Ga0209229_100034493	F000847	AGG	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSVCEIPS
Ga0209229_100034494	F001129	AGCAG	MPTPILQQMLGQGGSMRFVDAAVSGQNFDFIVVNAAATFTTLTGTGGEDLLTAYALSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0209229_100034498	F009057	N/A	MATFRKFAFPDGATAEKLLGQSLQPLDFAVRVGEIDKAVCVDILFHDTCPEPLAAFVVWPAPVGVHSFSGWEEQYAADFQEFATPSK