Scaffold Ga0209229_10002515

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10002515
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7559
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F012013	Metagenome / Metatranscriptome	284	Y
F015988	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000251510	F000450	AGGA	VGDRANFVFVQPGGNTIVLYGHWAGHNMLANLAEAIAKAQSRWNDPSYATRIAISNMIGDSWTFETGWGLQVNTISDNEHKIPVIDWEQMTFSLHEEDSFYNMDNKVRGMKNEPLFVMDLRSFVEKYTDVPILV
Ga0209229_100025154	F012013	AGGA	MAELDLQEATRRDDIYNELVIITDKITKLPVFPSLLWVWTFDIIKDIFDNHQYEDSTETDYETIAQGVTLKQIFDKFWEDVDTLGFSMDQGDEILNECIRDWMSENDFLVNPDDEEEDED
Ga0209229_100025156	F015988	GGAGG	MESEYIARKTKLVEYIKLHVISLEQDLENISQEMESLDPESKLSKELDFEYNHWSGQLLATRHILSVVEDIL
Ga0209229_100025157	F000868	GGAGG	MQHGAFDDENEMVMGAIMSDIADQLLDDWIQSNLDEGQLYSDWQIADRCDSNYLKGRFNQFYDLKPEDQYYVEVE