Scaffold Ga0209229_10002300

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10002300
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7842
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000230013	F003863	GGAGG	MESKQVSGRQVVHYRNYRRARDRALVRLAHLYPETYKQLLDEQRSFDEQEGKTWSINPDARLTVGIHTRANNTPPFGDPADAGEDEGNYGGEA
Ga0209229_1000230014	F001477	AGGAGG	VSNVYTIHPPKSELILFYEVVEKDGANTWGGANAEQAIQWLVNSPTGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209229_1000230015	F000821	AGGAGG	MNEEYLAAKASLCLNQAVEDLKQEEIARAIKNLQRANLALSRIFNLEEEDGE
Ga0209229_1000230016	F031792	AGGAG	MSYEPELNDPVFYGVEEEVEPIKCFRCSDELDEEEIVWADVEGQIVKEGNDTAWCVSCLPSEGDSNE