Scaffold Ga0209229_10002120

Overview

Basic Information

• Taxon OID: 3300027805
• Scaffold ID: Ga0209229_10002120
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8139
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F046899	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_1000212011	F046899	N/A	VQNAKLNNFNPSARQAIKEFEDWQRRVFAKNAKKGWRFFQPDTFDKPTPRSAREAWGAPYVRDEFEKKEERNNKIMFAIVVAILLLLSTL
Ga0209229_1000212013	F010016	GAGG	MEKVMATAKNDVTGDFIRSKPSNDMFDEGWDRIYAKKKRSDDVSPHLHEYELNKSTGEVQKKED
Ga0209229_100021205	F012016	AGGAG	MKDPYAWAIEEFNSHGDLVWSSIMQTRPKELSWIKDLPSKKHNIVITPLYKCEEKAEKITGIKSYRESTQRMIEANGGH
Ga0209229_100021206	F006587	GGAGG	MDKKYEGTGFVIVGLIVGCCITWGIMKYNQTQTKYKMNLKCIQGELYEEVRTNMFIKSHLECFEQKTLVP
Ga0209229_100021208	F014840	AGGTGG	MIPFSYAVVDDEGEVIRKHRWSVKEAKWFTENNPDVKVIKLDKPKEVKEDLFELVGECLF