NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10000006

Scaffold Ga0209229_10000006


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10000006 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78609
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (12.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015210Metagenome / Metatranscriptome256Y
F029447Metagenome / Metatranscriptome188Y
F029448Metagenome / Metatranscriptome188Y
F059988Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000000657F015210N/AMMLYESFRNNKHITVFDVDDTLVVTQSKIKVSNPQTGFYKELTPQDFNEFERRENDEMDFSDFKDLDILKAGRIIEWVFDILKRTISKGDPVGIITARDDSKLIYDFLYHHGVRIDPAYIFAINDPKSEFSGSIAERKKQAFVKLIEQGFRNFTFFDDDKENIKIAKSLTKEFPDIKMDATLIKKKWIPKFNDWS
Ga0209229_1000000668F029447N/AMNVKSLTLKNKLVDEKTGEFYFDLTAPSFVYEADLGVKALHYVMPDQIGRIDKISEIYFGSSEYIDAICVINNIFNPFIIQEGDVLVIPDLSRPDLVYQRPNPASRPTPTQEPYVDTGRQSQKDQSRVQRLIQKAKEKPAGVKTPLPPNMLQPGQDVKVYEGGNIKLGANLPSRSTFINANDSSNR
Ga0209229_1000000679F059988N/AMNYLTEKRKGYPSLYKATYESDWELKNLGYDYGSNLMSKMLSSYMFRNERLRQFIDEHLSPIMVYFINKVKYLRIYYNFAVPKDYEKIN
Ga0209229_1000000681F029448N/AMAISVTEILGTDSLSGSRLVINDNFNILASEINAMEVYFNPTAGTITNLNDLKTEALRVGLSTVLLDINANNFNILTRVNLSGNLNLNGGGLFRNDIDPQTLNDTYAGPSMTIAVGTSTAIPPYTVERVGNTSTSVLNIELNDGSIGQEIFFVYSDATTGVVEIAGAIDPIILDGGTAIQLNAKGQSVHLLCVDDGTGNGDWYITGGSGYTIV

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