Scaffold Ga0209358_10318973

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10318973
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 757
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025226	Metagenome	202	Y
F046906	Metagenome	150	Y
F066529	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_103189731	F025226	N/A	VREFYGIAYTIHNPSERHQQMTMWLTNHQYLCKSTDMIVIWNNLSEWAGSADSAELRHKVIIAYKNALEREKK
Ga0209358_103189732	F066529	GAGG	MIDKIRWFPIVDATGYPQKTDGTQRRIEKHQEEYRAIVKAAKAEDKLDDLLFELYCKKAEQQKIRLEIFTNRKLDVYV
Ga0209358_103189733	F046906	GGA	MYDQESNKTIDRSEGQANPLGDTHGKRNPVHLCFGYGNQLYAWPLGKRSGQRRDIQDDFTRFFYSYRRHDWIPEWYQTHAK