NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209358_10222854

Scaffold Ga0209358_10222854


Overview

Basic Information
Taxon OID3300027804 Open in IMG/M
Scaffold IDGa0209358_10222854 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009960Metagenome310Y
F067472Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209358_102228541F067472N/AMLTIENIQNIDGKEFQLSSGRKFIIGIARAYYDHYSFGVFPLMENNVASIKDGIVYKLHRTKKSRRGYKLVAPKMSWQPYVKPENLTLKNFILELHIQTGLLNAYNRK
Ga0209358_102228543F009960N/AALEVKGKGYYFRGFDNTTNDVTIFVLAGVSASNPLIRITLHKKGRMSTNHIQNTSCYVYGIEVDGLTFYFTKEKLNTPAEFRNTIEQILNGI

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