Scaffold Ga0209358_10003932

Overview

Basic Information

• Taxon OID: 3300027804
• Scaffold ID: Ga0209358_10003932
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10807
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F032245	Metagenome / Metatranscriptome	180	Y
F060730	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209358_1000393211	F019119	GAG	MEELSAKIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYINDVEIKNMIRMLESEDQDNLHMVTLSIKNFRDLRLQEHGEYSKVNGAYWKIAKNYAHEILNHEIFMQTMAAK
Ga0209358_1000393221	F060730	N/A	MGRMKEVYMQIIQANEGEVPEELTIADVARMKELEIFNWEQYEREQERIRVFRIKQENPREITKVAQTREFWEKELRKGQIRAITKGKQ
Ga0209358_100039323	F032245	N/A	MQEVFNKLMKAGLTPNAFYVLYCMHYKIVPDKSVNASLEVARLKSGDYLTENLELSGNSLKFIQEIEGYFKKSKKKTSKTLMGDEFLDNIKTFNECFPATKLPSGVYARVNVKSLENAFRWFFQEFDYSWETVIQATEKYVEEYAINRYNYMRNSQYFIRKQNTDKTWDSTLATYCDMISQDDYEAPVFFKEKIV