Basic Information | |
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Taxon OID | 3300027804 Open in IMG/M |
Scaffold ID | Ga0209358_10003932 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10807 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019119 | Metagenome / Metatranscriptome | 231 | N |
F032245 | Metagenome / Metatranscriptome | 180 | Y |
F060730 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209358_1000393211 | F019119 | GAG | MEELSAKIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYINDVEIKNMIRMLESEDQDNLHMVTLSIKNFRDLRLQEHGEYSKVNGAYWKIAKNYAHEILNHEIFMQTMAAK |
Ga0209358_1000393221 | F060730 | N/A | MGRMKEVYMQIIQANEGEVPEELTIADVARMKELEIFNWEQYEREQERIRVFRIKQENPREITKVAQTREFWEKELRKGQIRAITKGKQ |
Ga0209358_100039323 | F032245 | N/A | MQEVFNKLMKAGLTPNAFYVLYCMHYKIVPDKSVNASLEVARLKSGDYLTENLELSGNSLKFIQEIEGYFKKSKKKTSKTLMGDEFLDNIKTFNECFPATKLPSGVYARVNVKSLENAFRWFFQEFDYSWETVIQATEKYVEEYAINRYNYMRNSQYFIRKQNTDKTWDSTLATYCDMISQDDYEAPVFFKEKIV |
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