NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209358_10001805

Scaffold Ga0209358_10001805


Overview

Basic Information
Taxon OID3300027804 Open in IMG/M
Scaffold IDGa0209358_10001805 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16727
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (83.02%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F002489Metagenome / Metatranscriptome554Y
F003603Metagenome / Metatranscriptome477Y
F003690Metagenome / Metatranscriptome473Y
F029439Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209358_100018051F002489N/ALEDNLPMVNYIMLHRIYDLLTLISNKLVGSEDTSKMVEYHNQGYLLGPTPSFVPDTPDTDINFVQDTIDLEQ
Ga0209358_1000180512F003690GGAGMTINGFELVISNEYGLEFDSFLGAIYLPWHTIILTTLAVIAYKVYKRFYK
Ga0209358_1000180547F000441AGGAGGMKQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMGKAEGQND
Ga0209358_1000180551F003603AGGGGGVSAPYDIIDKERRTMKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTVDRIVEVVAWIIEKQAERYRREIANEGTVCEGLIISNMLDKMIDKIKVSNDLKSVQLPITPKERGEFIKSLPETKEQNYRYSWLHDTDNRTKVTIDHPFI
Ga0209358_100018059F029439GGAGMTNIVLEPSHPMASSNTGDNRLFRNSVGNYMSRKAYLELLASKEGCVSHRYLSPNESQWLLGVR
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