Scaffold Ga0209091_10077856

Overview

Basic Information

• Taxon OID: 3300027801
• Scaffold ID: Ga0209091_10077856
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1831
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015401	Metagenome / Metatranscriptome	255	Y
F029244	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209091_100778563	F029244	N/A	MKVSNLKFTTEMLNDVWKGHSVEMPKTDALRIVSNPKAAANFIAEFGDAEIVLNTEYSPRWEVAAFKVGRDEYGKLKQAYCDQYGSN
Ga0209091_100778565	F015401	AGGA	MKTTQDNMLNVMYGNHRILIDKLIEYDYNGDMAVAKKMCHVIRYGYDDEANDETTCETATHMIFNISPYTSLMDMDIMVKVWIDCGCPSDNGRKWTKVSLQEWA