Scaffold Ga0209091_10026060

Overview

Basic Information

• Taxon OID: 3300027801
• Scaffold ID: Ga0209091_10026060
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3650
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077814	Metagenome	117	Y
F079236	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209091_100260602	F077814	N/A	MSTVSQEQECQRCGYEYGYHEFQTRTSEEYFMCSRCGHQVRYEIVNMDIKNYKSGKNKGQQKKSWKPKYRTESIVPVASYIIKTTDALGKQMGPVPTDEDLENFRLNIKSRTEELTVAKITYLCAEGDHIGKWVEEDLLENKVKLLKQ
Ga0209091_100260604	F079236	N/A	MSYDNKKEWKMPKVTSNKTGVMQSGMHTHPREQRYGNLWNQIDFTVQEGVRGDGKDGYNNKTIGELVIGNHRVTLTWTECTKIIETLATAKDAFKTGKALDMV