NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209091_10002170

Scaffold Ga0209091_10002170


Overview

Basic Information
Taxon OID3300027801 Open in IMG/M
Scaffold IDGa0209091_10002170 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16691
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)58
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025145Metagenome / Metatranscriptome203Y
F038861Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0209091_1000217028F038861GGAMSDWIKYETPHKGVGMFVSVWIDKDNGLIKRIFNGDHCGEGRVRMTNKADILFKNEMYWLTHPMLSESKFLPELVEINEDTKTIIQKYYGSNLLDYLHDPKGFPVPNLSEQILEMYTFFTEVGVNKLNGALSNLSFNGDQVIAFDFKWARPSPKADAKEIKAFRKWFTKIDPDLVEQLIKIKSSNLPRKELDYKERKPYGLVSRYRNGSNTRKN
Ga0209091_1000217031F025145AGGTGGMWYNSFTMNIKHKPQFNIDKVTAHYSKKDGVPVKYVCTSDLDEQDIPFDIYYRDTPHPEHNNYYFGLYADEEDSMMICKADSIERHTFGMISEPDTDEWVYSQSQHNCVANDSGYIDGGRKYIKRGGDLDNQEHIICRIEDGEFVTK
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