NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233416_10159473

Scaffold Ga0233416_10159473


Overview

Basic Information
Taxon OID3300027799 Open in IMG/M
Scaffold IDGa0233416_10159473 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7Long. (o)121.4042Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005628Metagenome / Metatranscriptome394Y
F021782Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0233416_101594732F005628AGGAGGMLDAFFFRLLEAAERIRREERGDSLVNWVVLAVGLAAAAAALVVLLKPAIQDGGQNIVDFISGSG
Ga0233416_101594733F021782N/ASLARRERALDDRAALVRVAREAGEPTFARFCELLAAKESPYLDFLRQQAREARAEQNRYLERAADRAYLAMHAPVAPLLAVLVLLLAYGFLRFLAQSA

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