Scaffold Ga0233416_10063262

Overview

Basic Information

• Taxon OID: 3300027799
• Scaffold ID: Ga0233416_10063262
• Source Dataset Name: Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1253
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7
  • Long. (^o): 121.4042
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042081	Metagenome	159	Y
F056391	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233416_100632621	F042081	N/A	MMEPMNRPSILRSRMVRSTPWGLVVVAALALGGCFLAPWSPDRPSPSAPVSGPVPYVEDCQGCHAEPVGGHYAQSLHAAKGVRCGQCHTPGGHPNFTRPVEDGKCGGCHQPQYQQTLHSRHFATRQARRLDDDQPARAALRRAGFVAAGPAGRAFVGDTASGALGGRLCAACHYDEHRLGLRAVRAAPFCTGCHTDRESHYPDPAPGTPNRCVQCHVRTGETVSGQVVDTHRFGLPGAEETGR
Ga0233416_100632622	F056391	AGGAG	LNGQGAFDRDLVHAMTRRQFLARLGRASAAAVLVSSPLGCGTVRGGIERAQLGEAAPVFNPVQREVVARIIDGFNPPDTEVRRRLAAEDPEYDMVAAYATFA