Scaffold Ga0209353_10142743

Overview

Basic Information

• Taxon OID: 3300027798
• Scaffold ID: Ga0209353_10142743
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1070
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029433	Metagenome	188	Y
F042891	Metagenome / Metatranscriptome	157	Y
F048984	Metagenome	147	N
F051116	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209353_101427431	F051116	N/A	FEKIFTGTVAYTQTCTWITAAQILTYLGIATATADDTTFVTQCASAANNFAYRRRQECGYFDSLTTSPGGDVTLATIMLGSAYYRQRGGISDFASFDGMSAGSTNGLSPIVKQLLGVDRPQVA
Ga0209353_101427432	F048984	AGG	MAAQTYNDLFNTSINTLASTLNAITGLVCITDVRNVQAPCILLDAMSFTAFNSNIVDMSIPVMVISLGPSNADAYRNCLNIAAKVLAAKVAVTDGRPSTLSIGGIDYPALSLNIQMKAST
Ga0209353_101427433	F029433	GAG	MDYEVTSNRLNGHRRGDIIKHADLGDLTTDLLFLVEAGHLSPLKPKKSVKTIDTEQKD
Ga0209353_101427434	F042891	AGGA	MATSVYLSNPNVTINSVVLQDQCTSATVNYVLEQLETTAFGDTARKYGAS