Scaffold Ga0209107_10132190

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10132190
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1296
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_101321901	F093847	AGAAG	MVFLLQSQKDSTLTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTVHNKDLISL
Ga0209107_101321902	F039139	N/A	MSMFLNSFEFTSEDIVSILRAHDTDITIHQIAEIHDVLDHDSIVRSALQYDDPDMQLKSALSKAEDLMIMDGLFITEPKRFHVDD
Ga0209107_101321903	F060908	N/A	MTRKLDYTVSESITTQSKKRIQIPKKYASYIGLKEKFVAHVTNLNGSYVISACPTPESKKYMVDKDGAIRFPVQKNEYKIMIADSVVVIL