Basic Information | |
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Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10000953 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16422 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (69.44%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006506 | Metagenome / Metatranscriptome | 371 | Y |
F008554 | Metagenome | 331 | Y |
F010472 | Metagenome | 303 | Y |
F023573 | Metagenome | 209 | Y |
F034176 | Metagenome / Metatranscriptome | 175 | Y |
F048781 | Metagenome / Metatranscriptome | 147 | Y |
F073563 | Metagenome / Metatranscriptome | 120 | Y |
F093145 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209107_1000095323 | F093145 | GAGG | MDEDKDLIAFITDLDMVIAEHQDKYPPHSIAGILLSRVTLLMINDPVVGKELLKFVWNKLDELEQSNPGQYL |
Ga0209107_1000095328 | F073563 | AGGAG | MNPKHLYTVRWTQPYATYQMRPYLRQLRNDYEQLIEAQLERKQWPEAQQVIKRIMKL |
Ga0209107_1000095329 | F048781 | N/A | MSGWNTIQRLRHIEEEIDKIGFKFAKSKHGDWTDDHGALSLVPKDAEALPLYSRDAELFVGSLERLEDWLAGVKWARDYDMMCRISTDEKRSEAEQKVRNRQLMRTLKEGKRVEGVEE |
Ga0209107_1000095332 | F008554 | GGAG | MNIQDEMIEFKAKQLSDEIDREVLWGMLEGIGWHRVMLPRLTDNNHAVDIAHWLALNCKNSHERSGRDFLFESARDADWFVLRWGTT |
Ga0209107_1000095333 | F034176 | AGGTGG | MKHNYVKHRDNVGDLEYFISKFECRVEDSRVYNQYVRPAPYYRDFCGSDSFQTETKILPMKAIHLTSVNLARLVEEQEHLQRLTDDREYSKKIWADASRDQMVRDKNPAVEKAYQKYQMLLELARK |
Ga0209107_100009534 | F023573 | GAG | MAMLTLLTTTGEYNATVTIQGPCGVILIRDLVWMPLDRQDLLEICYWESWAVLQGAYHCCFSIPGKVALLPPN |
Ga0209107_100009536 | F010472 | GGAG | MSALAELMNSGNTWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTDKLEEAAADQQATAALVYGVTQLISLY |
Ga0209107_100009537 | F006506 | AGGA | MKRLLAACAFFALTGCASIMEYIPSSWDVNQAKSITDIQQQVRHFDCKADLKPQVDQLAKNVEWFDIYSQTKPTRDINKLTGTITDTVKELQERVAKGPVSPLYCDLKKKIIQQQADILAKSVQGRF |
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