NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10000953

Scaffold Ga0209107_10000953


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16422
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006506Metagenome / Metatranscriptome371Y
F008554Metagenome331Y
F010472Metagenome303Y
F023573Metagenome209Y
F034176Metagenome / Metatranscriptome175Y
F048781Metagenome / Metatranscriptome147Y
F073563Metagenome / Metatranscriptome120Y
F093145Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000095323F093145GAGGMDEDKDLIAFITDLDMVIAEHQDKYPPHSIAGILLSRVTLLMINDPVVGKELLKFVWNKLDELEQSNPGQYL
Ga0209107_1000095328F073563AGGAGMNPKHLYTVRWTQPYATYQMRPYLRQLRNDYEQLIEAQLERKQWPEAQQVIKRIMKL
Ga0209107_1000095329F048781N/AMSGWNTIQRLRHIEEEIDKIGFKFAKSKHGDWTDDHGALSLVPKDAEALPLYSRDAELFVGSLERLEDWLAGVKWARDYDMMCRISTDEKRSEAEQKVRNRQLMRTLKEGKRVEGVEE
Ga0209107_1000095332F008554GGAGMNIQDEMIEFKAKQLSDEIDREVLWGMLEGIGWHRVMLPRLTDNNHAVDIAHWLALNCKNSHERSGRDFLFESARDADWFVLRWGTT
Ga0209107_1000095333F034176AGGTGGMKHNYVKHRDNVGDLEYFISKFECRVEDSRVYNQYVRPAPYYRDFCGSDSFQTETKILPMKAIHLTSVNLARLVEEQEHLQRLTDDREYSKKIWADASRDQMVRDKNPAVEKAYQKYQMLLELARK
Ga0209107_100009534F023573GAGMAMLTLLTTTGEYNATVTIQGPCGVILIRDLVWMPLDRQDLLEICYWESWAVLQGAYHCCFSIPGKVALLPPN
Ga0209107_100009536F010472GGAGMSALAELMNSGNTWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTDKLEEAAADQQATAALVYGVTQLISLY
Ga0209107_100009537F006506AGGAMKRLLAACAFFALTGCASIMEYIPSSWDVNQAKSITDIQQQVRHFDCKADLKPQVDQLAKNVEWFDIYSQTKPTRDINKLTGTITDTVKELQERVAKGPVSPLYCDLKKKIIQQQADILAKSVQGRF

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