NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209107_10000296

Scaffold Ga0209107_10000296


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29671
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (59.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F011224Metagenome293Y
F024484Metagenome / Metatranscriptome205Y
F058144Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000029610F011224N/AMAYFDTLGFEWIFNVTDYEKKKFWTVLKGDDKVDFPIPRHAILRARANPQRFPEIWAFESEISLKELQIYSEETPQVLADAIRRCGQNVFKTHKEESVIV
Ga0209107_1000029635F024484N/AMLTPTKHTVDTKLFQEACNQLPKHGMKTTINKPSGDFFYNPWMLKDEYKGTVWETLYNSLPVDKGEARIIILDPGQCYQIHADIDDRYHLNIWGDSSYLINLVQEIMYPLSQDGIWYDMDAGFLHTATNFGRKARVQLIVRKLLKNNKLTNPVEVALATSMDNTNHARFLFDNTMSPWFNEANKLGYINNFTQGNIAVTFNIEQDKLDSLKCILPKEFKLI
Ga0209107_1000029640F004256N/AMNYEYYYNNVPGDGPSRNNLIYTSLISADKKTFVQWYYNDVTYHKNQNQVVDATKMEEKWLREVNYLTQMRNKYPELVPIIKNIDLEKKKLFLEIDGPDFWERAGCDTANYDRVLPDWQDQMLEIIQAHKSLGLYKYSMHPSSYFVVNGKLKSINYFFTYRKDEPQFSIADVESHIYITRQQEMKKHMGGLGIEWDSPQPFEVMEQLCWASFSKNYPADFIEKVKCLT
Ga0209107_1000029645F058144AGGAGMYLCKEEVQKILNTMDLFPEATSFELLQDAGNGIGSTTNLIIHTKINGLDGEFKTEISGVENW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.