NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10000271

Scaffold Ga0209107_10000271


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000271 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31670
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F003080Metagenome / Metatranscriptome508Y
F011665Metagenome / Metatranscriptome288Y
F018716Metagenome / Metatranscriptome233Y
F026556Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000027123F011665AGGMQNPINLSPITQFAQIVRSAELSQSKEVKIPIQQARLMNLALIELMDQLHQDYETMYNALKRGVTEEPISVSMDGGGFSNK
Ga0209107_1000027128F002977GGAGMTPEIPAEGILKQNSWGDSKTYRVVCECSSNDCDHNVWVEAEDTGITVTIYTTTRTNFWSKTRWYHIWTLLTKGYIDTEANLIMKKQVALNYATVLQSAIDDVERFRERYEQNKNS
Ga0209107_1000027129F003080AGGMTTAKDLTDQLINRAKHLKEFVVERDIHHIPRGVIKFNVQHTTGEPARIFVPALTQQEAESMVDEWFGEEA
Ga0209107_1000027133F018716AGGAMTDTTVTVVWDNQNGFWWNETCAMVLEVFGLPGERYATHPKHDAMYFNFKNQKDADLCRILLSERL
Ga0209107_1000027136F026556GGAGGMTSALIKLVFGITLVVIAVAIGPLLGIWSLNTLFPSLNIPFTFETWAAFALLLGGASGIRYRK

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