Basic Information | |
---|---|
Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10000271 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 31670 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002977 | Metagenome / Metatranscriptome | 516 | Y |
F003080 | Metagenome / Metatranscriptome | 508 | Y |
F011665 | Metagenome / Metatranscriptome | 288 | Y |
F018716 | Metagenome / Metatranscriptome | 233 | Y |
F026556 | Metagenome / Metatranscriptome | 197 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209107_1000027123 | F011665 | AGG | MQNPINLSPITQFAQIVRSAELSQSKEVKIPIQQARLMNLALIELMDQLHQDYETMYNALKRGVTEEPISVSMDGGGFSNK |
Ga0209107_1000027128 | F002977 | GGAG | MTPEIPAEGILKQNSWGDSKTYRVVCECSSNDCDHNVWVEAEDTGITVTIYTTTRTNFWSKTRWYHIWTLLTKGYIDTEANLIMKKQVALNYATVLQSAIDDVERFRERYEQNKNS |
Ga0209107_1000027129 | F003080 | AGG | MTTAKDLTDQLINRAKHLKEFVVERDIHHIPRGVIKFNVQHTTGEPARIFVPALTQQEAESMVDEWFGEEA |
Ga0209107_1000027133 | F018716 | AGGA | MTDTTVTVVWDNQNGFWWNETCAMVLEVFGLPGERYATHPKHDAMYFNFKNQKDADLCRILLSERL |
Ga0209107_1000027136 | F026556 | GGAGG | MTSALIKLVFGITLVVIAVAIGPLLGIWSLNTLFPSLNIPFTFETWAAFALLLGGASGIRYRK |
⦗Top⦘ |