Scaffold Ga0209107_10000167

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000167
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38390
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (77.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012451	Metagenome / Metatranscriptome	280	Y
F026484	Metagenome / Metatranscriptome	197	Y
F071029	Metagenome / Metatranscriptome	122	N
F080900	Metagenome / Metatranscriptome	114	Y
F088810	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000016723	F080900	N/A	MKKIVSEIHSLTWTLAGTGMVLITLSGSTRTLGIQITLVAIMVHMLGALLGDKNE
Ga0209107_1000016729	F026484	AGGA	MTTTNDAMYEALSVAYPSTGQTLGDLLYAFWSEKGLQYRGTLEYDFYVAAGATGATRGDLANDYFVRVYPLEFDTLNFDYNDPDEWLELEVFNRTDTVEQQIFIN
Ga0209107_1000016730	F071029	N/A	MSENSNLDERQEKFLNWLCTPSVGRIPSSQNQYAKQESIDETTLRRWKKKPIFKSEWERRVTEQQQSPERTQQLLDNLFQRALEGDNNSAKLYLQATGRLAPVQLQVEHSGKASELSDSELTELIAASAASEQRFRLDTKVSKDR
Ga0209107_100001675	F088810	AGG	MATLTIPNTFTNGTPAVATEVVENFNNVKVFAEALAAGTNIDDGAITYAKLAAAAVTALTTSGDNNDIVLGGQIFG
Ga0209107_100001677	F012451	AGAAGG	MAYVQMTATALRDTVRSITDLDSEDLPDSLLNVYLRDGYYRILDLEKRWSFLEKSFTFNTVAEQRAYTISSFTADPISQVVSIVDNNNIGFRLDMVGHDMAEQTYVGSYDTSGDPLFYSIWEGKVHLFPKPNNVRTLVVRAYREPIDWITSEGNVDASANLHFPLVYYACSRVYQRLEDTLMAGEYKRSFDEGVTLAAANISKPTSHANLRLNAGQTSGRPTYNGWLQTMAKNLKVNQ