Scaffold Ga0209373_10150481

Overview

Basic Information

• Taxon OID: 3300027796
• Scaffold ID: Ga0209373_10150481
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: University of Edinburgh
• Coordinates
  • Lat. (^o): 55.9225
  • Long. (^o): -3.1724

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058258	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209373_101504812	F058258	AGGAGG	VRKIVIIAFAVLMAGCASLPPTIDQGEYQSYRYGFIVRLPDDGWLMTKTVPESFAAYLVPETPERVLVLLHNPQTRGLIALRGGTLYLSYENALTLQERLTELIEPVLDLDWTRLVREIPESRGSYRLGHWDASGLQWQERSESRPLAGIKHTSMGYYYPLNGETCYVTFYLFSEPDTFDDNVKALHRMAGTFS