Scaffold Ga0209972_10099299

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10099299
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F004115	Metagenome / Metatranscriptome	452	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100992992	F000545	N/A	VDESWFRWALGLSEMKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPADRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGGETLERPYNANL
Ga0209972_100992993	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSQIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRVGSDGHWVFQK
Ga0209972_100992994	F004115	N/A	LQQNSQEWWKVQSARIRISISLDTPLSWVDADFLLQKIGTTLSLTRNHNQNQYCDYCKYRWGTNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP