NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10077340

Scaffold Ga0209972_10077340


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10077340 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F011938Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100773402F002060AGGMDYTSITIALLAAVFSGMGTAFVAALKENKKEKTRKAEREQDHLKMEIKDLKIALFQIERELTDWKDKYYNSIQELIQVKAELENALVQLNIIEYKDLDSEY
Ga0209972_100773403F000671GAGGMEKILCYSCNKSKNKLDVKKSSLLPINLLMCETCVTSKLEPRWVIILAGRSNGAEHVKEYIQKRRYIGNEVSASELLV
Ga0209972_100773404F011938AGGGGGVREYYDIIHIVFIHSENCYGTVEKLGAFASLVKYNIDGKEVEELLENEDFTIVDEIVHQHIEESN
Ga0209972_100773405F000473GAGGMFIDKNKDHFKHGINWWTGEPAKPVFYTDEMKKRVYEIPKPAMLLMDIVKYPDFLALRLYEDNFIQFDGTKKERVIDYVTKVKKLIESYGVRCELEGVPSARVL

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