Scaffold Ga0209972_10024554

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10024554
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3605
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006743	Metagenome / Metatranscriptome	365	Y
F042880	Metagenome	157	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100245541	F006743	AGGAG	MRTENWQSNMRGLRLVGEDESGPVLSPYGPVKAGLTTSHSHLTQRVKQDQVLSELLNCLEREVESLNSKYCEAYVTLMLVMEHLARLSAIITEPRTTDTL
Ga0209972_100245548	F042880	GGAG	MASYTTVGELIEHLKGEDSNAPIIYQYYLAEHFEVSEEVFGQVARDFDSLVPCLDNSYLAIEEEINNKREEVNV
Ga0209972_100245549	F079999	GGAG	MSDLFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKRKGEGR