Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10009540 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10009540 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6602
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6602

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F073276	Metagenome / Metatranscriptome	120	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100095401	F064518	N/A	ESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIDDISKSKK
Ga0209972_100095402	F073276	N/A	MSLIDLANIFEAATDSVNGLNGFSFGWASDRVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLTTTKTTNSIPEEVNLTLDSFTSIQRLITVQATFNISIKSEC
Ga0209972_100095405	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENIDLGNISGAHSKRNVTLPATKNNVSIFQNITDAGAIVTSAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASNFKVSLIGNNADWFADVGNILVRDLGWDDIEINTANVKTNYDPLTSEHCYILMKWKAWANETYIVNNEMTPAIFIWQILEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASIPSPSLIDNITNPSPVLITFTDENTSPNFDTGGNYSSGVYTVPITATYTLKAELNIANTILVPTLTDEILVGWEINGVFEEGEDLGQEPSFNDSVNIEFLTDLVEGDLVRFVVKHNNCGFLMGLNGSIEITGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTVFNLAWETNVQSKQVYAYPKDDYTIRYRADATGAISLTTFEGFFKGSDKYDLNTRDLDGSEFQILDGYKSSQVLAYATDDDTTNKEEARRGVNIYSGGYNFPSDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLLFGDDYNTVTDAEPNYNLAPRLLYYAGRRSGLDGYIRLYDEASSAASAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKVKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNVNDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFINSMTNVLILSANSGITQVSNTNANVLVFQNGQKLIPTIQYIISGSTVGINVNTHYDGANYEVVVNGVTKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10009540

Overview

Ecosystem & Geography

Associated Families

Sequences