NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10002985

Scaffold Ga0209972_10002985


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10002985 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13484
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068608Metagenome / Metatranscriptome124Y
F073287Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100029855F068608AGGAGMGSGGYRPEASQNDPYSVSPNGGNGQSGKFVAEKVAKATQLRPSGFAQGENTAMAQQISEGGNVSTTASAANPASQLPQAGMGADMAQLLGAIEPLDSEPTEFRPVSDGIDGFSGRGSEALPPSLNPNNRQIENTELVRRYLPDMLNAARMPGAPDSYKRMINALMRELM
Ga0209972_100029858F073287N/AMPDKDGNLVKKDSAFVKKSFSKLSEKAQTALAQYIITVQNRQPTDAARKTVWNSIVDAAVASYKEGKKQTPWDVLQVQLDNAPKRVDATYTYTNYDKITTDAILNQAARQLGFTEGPFAQFGEQDLADFYTKLTAAAKASGKTKQTVVKPDGTTEIIETPSLFDANSFAQNYLWSKVNIGDPKTLPTSVIDKIGNVRTILKANGLGYLSDKEIANYALQLTKGEVNINKLQEQFNAKAAELYPLFAERLKANPSLTVMDLAQPYIGRMAKWWGIDPTTVDLDNADLDKFLRPDGTAGKVPMKSLSEWDDYLKFHPNAEKAPWAIEGARDLAIGLAGAMGFGV

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