Scaffold Ga0209972_10002428

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10002428
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15280
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004050	Metagenome / Metatranscriptome	455	Y
F005323	Metagenome / Metatranscriptome	404	N
F007223	Metagenome	355	Y
F012870	Metagenome / Metatranscriptome	276	Y
F031078	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000242812	F005323	N/A	MATTEGESLMGRLQFMNQDGEWESFPTEDEIHRSKEVIAILEEFTFTTRCCLCNEAIPYKDIKVNLKSKSWSCAKCHAVNGLTKP
Ga0209972_1000242821	F012870	GGAG	MTDMEQWNKENDAFLALIGQVAKATPKPVSKKDEE
Ga0209972_100024285	F031078	AGGTGG	MEAIIYATLGLIAIPVIRTAIKSYRAKKAVGDIVVDAIEAAVDTVEKK
Ga0209972_100024287	F004050	GAG	MARKKVIDLDTYSRLDAWAISLHEMYRALRRAGFAVDIALSIIQDRDAYPDWILPSIPDRVDRLPYEDDDED
Ga0209972_100024289	F007223	AGAAGG	MFDPSLGDFIAMIVLSAVYFHLGRIVGIRVGYLKGRKAVRDYYATKERVRV