NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10001928

Scaffold Ga0209972_10001928


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10001928 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17452
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F004839Metagenome / Metatranscriptome421N
F033801Metagenome176Y
F103247Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000192811F033801N/AMKYEIRWKTGKVITDAPNIEEAIKKFKELRIEVPDKEISIASFGK
Ga0209972_1000192814F004839N/AMEKNFNNLQFKWTFESISDNIPTIMLATIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEHYEGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINETKIIRRRKRRTIIKNVQEDLPKVVRRNITSFQLSLF
Ga0209972_1000192824F103247N/AMGYTEKTVLYRGLDFDSGRTSNHSAGGVAGTGSITPTNSEPNTQNSSVTKVFKESFLDSYTNVLTVTKNSGVLPSNLEQLLIFQNGQELISFQFTVAGSVITIDSSTHYDGSNYVIFFII
Ga0209972_100019283F002778AGAAGGMDLLAKKDFHFKNYQMKEYNTKMLEIKAFCEEINQWISTAPSAEHLEECDEYLRQLSAYYSRYTMISGMNESIYAYLMMTCIKNMPDEEYKKIKHSSTLTDYYIKGKYPNATAIFEQCRAVQKLLIVTSDNYRTLLSSFRQERILVGHMTT
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