Basic Information | |
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Taxon OID | 3300027793 Open in IMG/M |
Scaffold ID | Ga0209972_10001008 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25986 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (79.17%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001507 | Metagenome / Metatranscriptome | 681 | Y |
F005745 | Metagenome / Metatranscriptome | 391 | Y |
F034902 | Metagenome / Metatranscriptome | 173 | Y |
F040535 | Metagenome / Metatranscriptome | 161 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209972_1000100830 | F034902 | AGGA | MISTALAIQEATAEAVHDEGVMDMAAMIYHNRNEMSSDEFVRAMFMYSAHLSALTATLVTHACLTEGQIDEMMDTIKEFDNLGKDITNGND |
Ga0209972_1000100835 | F001507 | AGG | MSKLYTIDELVTEIYEDNLSHFEFMENMNGGDCDCALHNTMHTIIRYWE |
Ga0209972_1000100837 | F005745 | AGGA | MEVTPTTLDARLQKLVNLGVDGIDIMHGELKIKMLEAEAEFAEAQRIEEENDYSDAMESMERKYWEGYTDALALCYGLTYDISFAISAKEKE |
Ga0209972_100010088 | F040535 | AGGA | MLVLDYTVEKEGSLVAVENRLMLNEYQINNLLDSLVANGYDVLSTWVREDN |
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