Scaffold Ga0209972_10001008

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10001008
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25986
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F005745	Metagenome / Metatranscriptome	391	Y
F034902	Metagenome / Metatranscriptome	173	Y
F040535	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000100830	F034902	AGGA	MISTALAIQEATAEAVHDEGVMDMAAMIYHNRNEMSSDEFVRAMFMYSAHLSALTATLVTHACLTEGQIDEMMDTIKEFDNLGKDITNGND
Ga0209972_1000100835	F001507	AGG	MSKLYTIDELVTEIYEDNLSHFEFMENMNGGDCDCALHNTMHTIIRYWE
Ga0209972_1000100837	F005745	AGGA	MEVTPTTLDARLQKLVNLGVDGIDIMHGELKIKMLEAEAEFAEAQRIEEENDYSDAMESMERKYWEGYTDALALCYGLTYDISFAISAKEKE
Ga0209972_100010088	F040535	AGGA	MLVLDYTVEKEGSLVAVENRLMLNEYQINNLLDSLVANGYDVLSTWVREDN