Scaffold Ga0209972_10000511

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000511
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38146
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (16.13%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F006590	Metagenome / Metatranscriptome	369	N
F009808	Metagenome	312	N
F035767	Metagenome / Metatranscriptome	171	N
F049620	Metagenome / Metatranscriptome	146	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000051136	F003786	N/A	MNLAKYQPHNQDEQSIIESRPNRIANIEPKDAFRNVLNVISSLFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKAREELYANFPTMLKEFKGKDYTSVPLYWYDMCVQFGMIEYEEGEKRALWEEAQALALKEPPESMDLMTIRSHAKKIEQGNTRRAAVIAQQLAVWRKVLK
Ga0209972_1000051137	F049620	N/A	MTPEERDEKIVGILTKICINVLVKNLFDKNGVRVYEDVLHELNQLPVNEEEYTRCNHAHAFLHKTAIEYLQKTIVFNEEHRNK
Ga0209972_100005114	F035767	AGGA	MAYLSAKQINHLKNLQKSNYAGRRSFQGMSLRVVGLADSVIEFADLMEQCTVTERSRVIDSATPIALEVYRSLVPMSSKPHRISTNPFKNKKMQGWEENDRASMWVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVYGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQVS
Ga0209972_1000051150	F009808	N/A	MTITKHHNKMKRNFNNQTFEWLFNDIASSMPKIIFVGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSEKRSPYPAKVAAGATVVSLLELYFSIQGQSTGAEFYAMFIFIGTVICFGYFLEIQFIEKGIEAYGIGMKAPRKRNVSKKEKEPVKMNTTVRSVQLSLAIMLVLAVTTVNGQNNHFMAYNTMSLEKIGDKMLERCYYSEADDSYTVDTIHYDMLDGINLWDGYSRTTYDNCLFMTFGTQQLEYFPLMGIWKHGKKYYDYHDLLKFVSKYVKRNFLNKKINYDEIRRDRSSHEAKWFGSMRD
Ga0209972_1000051158	F101173	AGCAG	MAIRFSTTVYNEKSRKITVSIKDSAFSGTVKTFDTLSLGIQYDSESQQGQERFTPIIGSRCSLSLLINNEDLQTLLLDIGLAVEGRFTMELIAYEDDNTTVSFKWYGYIVTDLVEFEDVPLVIGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVIQHILNCLNQLDFVQENLVANSLPVLHTIFNWHENTIAYNAASDYSLLTVIQHRAFYHKDTKSNYVYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYSRTPATKRYFKYNAFGIQQSGTFTADLTLSNIQTNLPGSDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYATNTTPVITTTPTLDASNPDARLSYTGILGFYAQALNPANFEAYQFVFAVKVVSIINSFPLQGFENANWTLGSGWIIDNKILSGVLITTDAYYTTFSVVNGRKYYVKIKVDIDNNGELLLSLGGVNKTITESGDYDYVIIATNTDTLKFSSVSSPRFTGKIKSLEVKQENKYLKRGVNYTSGFNFQLEAASWESSFYEYEFNTETITADAAFVAYKTITFDTLDIPDTAEYIWEMRLKQMRNEAGTSIISNFAVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTVFSLDTYIGDGPSKTTDGGLKVLESGTYENSSSWDVGNGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSLDLKTEIWQGDYFKIELDA
Ga0209972_1000051161	F006590	N/A	MKTITIANTSIPIKFGMYVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKAESLPLNTSNAFVSEF