Basic Information | |
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Taxon OID | 3300027793 Open in IMG/M |
Scaffold ID | Ga0209972_10000445 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40274 |
Total Scaffold Genes | 62 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (9.68%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015602 | Metagenome / Metatranscriptome | 253 | Y |
F017300 | Metagenome / Metatranscriptome | 241 | Y |
F028802 | Metagenome | 190 | Y |
F030766 | Metagenome / Metatranscriptome | 184 | Y |
F078724 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209972_1000044512 | F017300 | N/A | MSKVTVCADKDGNVIGVSENNPEYGYVRVEQTIQEINDQGWLRIAKRSALIKGKVEDLQQMNFADGQELEGKIVVKESLTPFNTDEPDRDLKIAGDTGVICRQDDQPIYRQANYTTNPDAFDVFVTHTNGQEIKDVQQAQKAMNALQAAGKARLEAQL |
Ga0209972_1000044519 | F015602 | AGAAG | MSQPYFTGRLHKQQGRLQSGNLAMKKQFELFVSAIPDGSIVEVFYEVQKDDGTLPQLAKLHVMIRELAIFTGESVENMKLLVKDRAGLCIAKEVAGKEYFLAKSFGDCSREELALAIQAAIDIGNDVNCPVG |
Ga0209972_1000044536 | F030766 | N/A | MAKKFYAQKDALGWPIPGTMMSADKVPATSLEIPAVTAAGGQSNPNGLRYFVRVDKKGNIIPNSLIVSLKKPAGDVVEFKLPA |
Ga0209972_1000044548 | F078724 | GAG | MIDKLYTKYFQKSRSFLFPILGIKKTANFSPTGTYVALNNLINPEDMKLIVSYKRDDSEGFKKFEEQMLIGNPLYRQVIEVQDHRVYVFDFKIHMNDWFNFLLGKYSQLSNVFKRAIREYYGEESSEYTYIKTFLYPKEYFDQYAKLLDVDVSVLQKIGELCDPCDLEKETLKIPVELLEISEKAL |
Ga0209972_1000044549 | F028802 | N/A | MMLITSTWGDKKTFKLIPVTPDSPYNEGIYDPDTQVLALVGKERKQSLHMLPKLNDLGDVYRLKIGKRDNGKDYAEERKTLETYYEYYLENHAEIETFIKSVSINADSFDYSQYLSGAANPSTAETKTNLVTTV |
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