Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10000445 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10000445 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40274
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (9.68%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

40274

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (9.68%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015602	Metagenome / Metatranscriptome	253	Y
F017300	Metagenome / Metatranscriptome	241	Y
F028802	Metagenome	190	Y
F030766	Metagenome / Metatranscriptome	184	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000044512	F017300	N/A	MSKVTVCADKDGNVIGVSENNPEYGYVRVEQTIQEINDQGWLRIAKRSALIKGKVEDLQQMNFADGQELEGKIVVKESLTPFNTDEPDRDLKIAGDTGVICRQDDQPIYRQANYTTNPDAFDVFVTHTNGQEIKDVQQAQKAMNALQAAGKARLEAQL
Ga0209972_1000044519	F015602	AGAAG	MSQPYFTGRLHKQQGRLQSGNLAMKKQFELFVSAIPDGSIVEVFYEVQKDDGTLPQLAKLHVMIRELAIFTGESVENMKLLVKDRAGLCIAKEVAGKEYFLAKSFGDCSREELALAIQAAIDIGNDVNCPVG
Ga0209972_1000044536	F030766	N/A	MAKKFYAQKDALGWPIPGTMMSADKVPATSLEIPAVTAAGGQSNPNGLRYFVRVDKKGNIIPNSLIVSLKKPAGDVVEFKLPA
Ga0209972_1000044548	F078724	GAG	MIDKLYTKYFQKSRSFLFPILGIKKTANFSPTGTYVALNNLINPEDMKLIVSYKRDDSEGFKKFEEQMLIGNPLYRQVIEVQDHRVYVFDFKIHMNDWFNFLLGKYSQLSNVFKRAIREYYGEESSEYTYIKTFLYPKEYFDQYAKLLDVDVSVLQKIGELCDPCDLEKETLKIPVELLEISEKAL
Ga0209972_1000044549	F028802	N/A	MMLITSTWGDKKTFKLIPVTPDSPYNEGIYDPDTQVLALVGKERKQSLHMLPKLNDLGDVYRLKIGKRDNGKDYAEERKTLETYYEYYLENHAEIETFIKSVSINADSFDYSQYLSGAANPSTAETKTNLVTTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10000445

Overview

Ecosystem & Geography

Associated Families

Sequences