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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10000150 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 66498 |
| Total Scaffold Genes | 105 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (23.81%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032580 | Metagenome / Metatranscriptome | 179 | Y |
| F053241 | Metagenome | 141 | N |
| F091917 | Metagenome / Metatranscriptome | 107 | Y |
| F093304 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000015022 | F053241 | N/A | MQKFIINEKLLEALDEYDKRSLLMQQHGSLGLPYEGVLYEDVNDDLIYHVPIYDTAHRRFAAFCAFTEAVWYKEQDLRGMGKHFTHHDIKDDFDWFMLFYLFRLCGSGINYVPRYKKDHIKDILGTHGFGNFWIVDSILKNRYTWPEWKEDLRNRITPFTDNKGYLLPQFTFEGETRGHLRKFILDYSEGLVRHLFEAVQTKRYDIYQLTDLGNDYLKDLGFKRQNFVLTAFAADISEYFPNYVNPKGWVYAGTNAIRCINAIFPKVSSRVKEFEYINEVLQFLSKRYNLNPIDCEDSRACDVVRYFQEYQSDDHIIKNNGRRMHNNSILKQTWGLDTYYDFAKRLK |
| Ga0209972_1000015061 | F091917 | AGG | MVNKSKRVITSVKIPQTLYEDFKVTSVKTKMSLQDIVERAMFMYLTDSGFRQSVHEQYNTYYTGSTLIDAIK |
| Ga0209972_1000015082 | F093304 | N/A | MAQAINPLFNITVGGKKYKLQFDVNDNPTKKGVKLQFILDQEFQDPRDKQALAQQISIALQKRLGAAGVMVDFDDRSPYRNVIGFIVPLNSVATMIIKAMKGGE |
| Ga0209972_1000015090 | F032580 | N/A | MKYTKRQLESLDTIEQAWDGDELKIWKDDVKVWLTHPENRKYNGDYTIERLINGRWEQENCLFE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |