NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000027

Scaffold Ga0209972_10000027


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000027 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)152913
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (37.06%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F001732Metagenome / Metatranscriptome644Y
F004723Metagenome / Metatranscriptome426Y
F008080Metagenome / Metatranscriptome339Y
F008356Metagenome / Metatranscriptome334Y
F028094Metagenome / Metatranscriptome192N
F038674Metagenome / Metatranscriptome165Y
F059677Metagenome / Metatranscriptome133Y
F060851Metagenome / Metatranscriptome132N
F065779Metagenome / Metatranscriptome127Y
F080979Metagenome / Metatranscriptome114N
F085209Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000002713F000962N/AMNIHVPEDLKNKYPHMEFRGKIRTIKDRPVIEAYNPVTEDTFFYSFEEDFFWFAGEIPDYKLEKV
Ga0209972_10000027137F059677N/AMKEKWLHSFEVEKTQKVKETTTEVNAAGEEIQITKEVEKKVPHKFYILRPNRKIQDEASVFYSVKVSEGIKMGLVTRNYLLRKFQQDGVLPSEEEKKAHAENYSKAIAIEIELEKVRQDSSLSDAEKELKNAALNSEYQVLRQKIFDYENVQNSLFDNTAEKRASDFLNVWFVLNLLYQGEEGSQTCLFGEGSFEQKLERLNQIEESGDEFLSGVVEKGGFLIGQLNSGVPKEELVG
Ga0209972_10000027169F085209N/AMNKFLKLALLIATLTTAAFAQNAPVRASFEAGYTSTYLVNGLSRTKATPFAGVGLGSTYYGIDVGVSGTILPVSENLDESHWAFNVGKGFEVFEGVTLRTDGSVIRHQAGDPNIPNSTEANIKVALQNKFFTPYAKGVYDINLDQYGYGVGIERPTSVFGWFTVTPALEYIKLSDSANAIAKIGISKTLFEHLTVFAEATYIKNDFDVANFNFARKELDGEVVGAGGLRWTF
Ga0209972_1000002746F008356N/AMNISEFERTKPTETHKKIKQLEKLILAEQQKTELLYSNRVATLDKMLVSVRELMDTFKKG
Ga0209972_1000002753F038674N/AMNRKDFFKTLFGGFVAASTTPSLAKSEENPQPPKDLALGREVLRVDERGSVGIGGGSGYLGLGTNTPTQALHVSGIIFHINDRKLEMSGDENGNFKIKWLDVKKDECNPAIIIEQPKVDPWKTSLNQIR
Ga0209972_1000002754F008080GGAMLKIKIWMRGTYEYSRDTIAGPMPDQTQEMFEEMFIESDECYSGGDVYETCPYFDFKDGRDDIKVYLGGDEYIQNHEKPVFETSDWNQFKFEEGGGCNYIPQEPDNVGEVNIWWSHDMKFNYIYYWSEITEFDPKKLTIQYGVDQRGEKYLEEVMYDGQCPDDYHDHGDTGYGYDGPEFVYHPDQKFAEEEED
Ga0209972_1000002755F065779N/AMDSSSIAISINLKIKDKEVTLSMEEAQNLYSQLKNVLGYNNQPYLIPYPWGAPSPYISYTITSSDTTSSNWKTS
Ga0209972_1000002756F060851N/AMKAILEFNLPEDQRAFEMANQAPDMVAAIGHFEDKLRSYIKYGHEFKSADEALCSIRALLHDEINIRGINIHD
Ga0209972_1000002758F001732AGGMKRFLILLIALLASGCFSTVPPARPSTANQQIIDNQEKKLDKTLDQIEKNEKGKKIQTSTLAQGIQYSLTQVTNPPVQVETAKSLNERVVSIVGSPHIDEIKRIKATVDLLNSAIEEERKKGLELLAQRDEIISKLQKEKVELNEKYDDQLWQMSDKAKKVAEEADAAKATLNSMSGMFGLNAVFWGLKKFFLSALTAIIIFSVLFLILRLLATINPIAAAAFSIFDMLGSLIISLFKGLTPKAFEMSNLISKEKFDEYKTPLIKIIDVIQDLKVEQEKHPDKTFSMQNILDQLDRDMDKTEKDLVQQILKELRWKK
Ga0209972_1000002763F080979N/AMQDDKPINMTKLSSAQEKNYKIVKEGQDFQIGDLIHLVDDEYVKLNKDNQLLKSKVTKYNKVLRKAK
Ga0209972_1000002765F028094N/AMSRQLEFDFRSPEEIARQKQIAEENAKAFESMFSEDVYVYNKYVDFLLDLIPFRLGWKARNWPREIRWWAKCRYQKFRYGVSDDDVYSLGYNIALFVLPRLKYFKEKGKAGIPVCFLPTNFHVLEGEELERAEAKGLKEMNDVLDEMIFAFEFIIDGDKFCDFPKSFVDKAWSDNSPMTIEEKQGWKEYMERASKLNERKENGLALFAKYYDTLWI
Ga0209972_100000277F004723N/AMKLIEGHKYIHTDIHGKKWELTYTGSRREIKGCEFEFFVDDKGGGCFFADSEVAKMEKIS

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