Scaffold Ga0209972_10000027

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000027
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 152913
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (37.06%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F001732	Metagenome / Metatranscriptome	644	Y
F004723	Metagenome / Metatranscriptome	426	Y
F008080	Metagenome / Metatranscriptome	339	Y
F008356	Metagenome / Metatranscriptome	334	Y
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y
F059677	Metagenome / Metatranscriptome	133	Y
F060851	Metagenome / Metatranscriptome	132	N
F065779	Metagenome / Metatranscriptome	127	Y
F080979	Metagenome / Metatranscriptome	114	N
F085209	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000002713	F000962	N/A	MNIHVPEDLKNKYPHMEFRGKIRTIKDRPVIEAYNPVTEDTFFYSFEEDFFWFAGEIPDYKLEKV
Ga0209972_10000027137	F059677	N/A	MKEKWLHSFEVEKTQKVKETTTEVNAAGEEIQITKEVEKKVPHKFYILRPNRKIQDEASVFYSVKVSEGIKMGLVTRNYLLRKFQQDGVLPSEEEKKAHAENYSKAIAIEIELEKVRQDSSLSDAEKELKNAALNSEYQVLRQKIFDYENVQNSLFDNTAEKRASDFLNVWFVLNLLYQGEEGSQTCLFGEGSFEQKLERLNQIEESGDEFLSGVVEKGGFLIGQLNSGVPKEELVG
Ga0209972_10000027169	F085209	N/A	MNKFLKLALLIATLTTAAFAQNAPVRASFEAGYTSTYLVNGLSRTKATPFAGVGLGSTYYGIDVGVSGTILPVSENLDESHWAFNVGKGFEVFEGVTLRTDGSVIRHQAGDPNIPNSTEANIKVALQNKFFTPYAKGVYDINLDQYGYGVGIERPTSVFGWFTVTPALEYIKLSDSANAIAKIGISKTLFEHLTVFAEATYIKNDFDVANFNFARKELDGEVVGAGGLRWTF
Ga0209972_1000002746	F008356	N/A	MNISEFERTKPTETHKKIKQLEKLILAEQQKTELLYSNRVATLDKMLVSVRELMDTFKKG
Ga0209972_1000002753	F038674	N/A	MNRKDFFKTLFGGFVAASTTPSLAKSEENPQPPKDLALGREVLRVDERGSVGIGGGSGYLGLGTNTPTQALHVSGIIFHINDRKLEMSGDENGNFKIKWLDVKKDECNPAIIIEQPKVDPWKTSLNQIR
Ga0209972_1000002754	F008080	GGA	MLKIKIWMRGTYEYSRDTIAGPMPDQTQEMFEEMFIESDECYSGGDVYETCPYFDFKDGRDDIKVYLGGDEYIQNHEKPVFETSDWNQFKFEEGGGCNYIPQEPDNVGEVNIWWSHDMKFNYIYYWSEITEFDPKKLTIQYGVDQRGEKYLEEVMYDGQCPDDYHDHGDTGYGYDGPEFVYHPDQKFAEEEED
Ga0209972_1000002755	F065779	N/A	MDSSSIAISINLKIKDKEVTLSMEEAQNLYSQLKNVLGYNNQPYLIPYPWGAPSPYISYTITSSDTTSSNWKTS
Ga0209972_1000002756	F060851	N/A	MKAILEFNLPEDQRAFEMANQAPDMVAAIGHFEDKLRSYIKYGHEFKSADEALCSIRALLHDEINIRGINIHD
Ga0209972_1000002758	F001732	AGG	MKRFLILLIALLASGCFSTVPPARPSTANQQIIDNQEKKLDKTLDQIEKNEKGKKIQTSTLAQGIQYSLTQVTNPPVQVETAKSLNERVVSIVGSPHIDEIKRIKATVDLLNSAIEEERKKGLELLAQRDEIISKLQKEKVELNEKYDDQLWQMSDKAKKVAEEADAAKATLNSMSGMFGLNAVFWGLKKFFLSALTAIIIFSVLFLILRLLATINPIAAAAFSIFDMLGSLIISLFKGLTPKAFEMSNLISKEKFDEYKTPLIKIIDVIQDLKVEQEKHPDKTFSMQNILDQLDRDMDKTEKDLVQQILKELRWKK
Ga0209972_1000002763	F080979	N/A	MQDDKPINMTKLSSAQEKNYKIVKEGQDFQIGDLIHLVDDEYVKLNKDNQLLKSKVTKYNKVLRKAK
Ga0209972_1000002765	F028094	N/A	MSRQLEFDFRSPEEIARQKQIAEENAKAFESMFSEDVYVYNKYVDFLLDLIPFRLGWKARNWPREIRWWAKCRYQKFRYGVSDDDVYSLGYNIALFVLPRLKYFKEKGKAGIPVCFLPTNFHVLEGEELERAEAKGLKEMNDVLDEMIFAFEFIIDGDKFCDFPKSFVDKAWSDNSPMTIEEKQGWKEYMERASKLNERKENGLALFAKYYDTLWI
Ga0209972_100000277	F004723	N/A	MKLIEGHKYIHTDIHGKKWELTYTGSRREIKGCEFEFFVDDKGGGCFFADSEVAKMEKIS