Scaffold Ga0209287_10017255

Overview

Basic Information

• Taxon OID: 3300027792
• Scaffold ID: Ga0209287_10017255
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2626
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017972	Metagenome	237	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209287_100172551	F017972	GGAGG	VKTRHLHLVTHEHSVTVKVKSDVSSAFGPVSPGSTTLLAQETLRVNQLRQLTELLNSLESVVANLNYKSSTALDTLLTATQGVRVALSATPIEEGGTKV
Ga0209287_100172552	F044984	GGAGG	MTDEVKRRMATASRKAVRDRNYRRARDRALARLAHLHPDTYKQLLEMEKKEDELQGKTWIDIDGSTTVPVVGVHTRATGADDLAYTSNAGENEGNNGGEA
Ga0209287_100172556	F031792	GAGG	MGYEPELNDPVFYAGDYEEAVKCFICGDQLDPDDIVWANVEGQIVKEGNDTAWCVVCLPSEGENNE
Ga0209287_100172558	F083706	AGGAGG	MQYVTPRGWLVAGILVGLAIWGLWEIASHLLWTGTGWEWCEDLLNCEKEGK