Scaffold Ga0209830_10119694

Overview

Basic Information

• Taxon OID: 3300027791
• Scaffold ID: Ga0209830_10119694
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1288
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y
F051564	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209830_101196943	F016204	AGGAGG	MDKEQYVNVLDIKFYVCDEDGNAVLDKDGTVKEFYNKGRLKPLEYLCEDMTVEDLEEVSNVNT
Ga0209830_101196944	F051564	AGGAGG	MSIPKQMLKEWCETYEEAIETLDYLANRSVGTAKEEVREGLEDYFIDNGLMSEDEFKELANEQQ