Scaffold Ga0209273_10117659

Overview

Basic Information

• Taxon OID: 3300027790
• Scaffold ID: Ga0209273_10117659
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1161
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013783	Metagenome / Metatranscriptome	268	Y
F048642	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209273_101176591	F048642	N/A	MATSFNLQEYILFRVEIKRELTNAEVDTNFQMVSNPWVTSRVYEIGNIVYHPVIVDDPATTGEDQVLAWWRANVRTTQGVFDTSEWDIIGGIGAGNINVQGANSFGRINVNSTIPTGTLQTGNDALLNANLPNDKFNLIAGAGMQLQYNVANRVIKLINTLAVAPGEINIGKN
Ga0209273_101176592	F013783	N/A	LILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVAAMQAYYNKNYIPIDNCFLGDLVSIQFFLAESELYDFTTEFKAMDVSTNLKLETGSAYDRQRNAGRKVLIDRQIQLIKNAVADYVKYYLELKYIYVTGIYSPCYAVPGWSENTWYLKSFRDAFISSRNTSEFPYNDLRIEEFPPK