NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209273_10087904

Scaffold Ga0209273_10087904


Overview

Basic Information
Taxon OID3300027790 Open in IMG/M
Scaffold IDGa0209273_10087904 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1385
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006143Metagenome380Y
F013592Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0209273_100879041F006143GGAGGMSTEEETSIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVL
Ga0209273_100879042F013592GAGGMLTPELLFLEEVLFEDSQVPLRVLAQFHPLVRIPFIGFQAADIIGTELAIRTIEAGGVGAIDLFTPEIRRYEQTALVGLGGMVI

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