Scaffold Ga0209711_10235801

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209711_10235801

Scaffold Ga0209711_10235801

Overview

Basic Information
Taxon OID	3300027788 Open in IMG/M
Scaffold ID	Ga0209711_10235801 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	824
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076506	Metagenome	118	N
F080493	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_102358011	F080493	GAGG	MAKLSKMDRMVMSEVNKACKDMVNYNADGTVNWDYVDADAYMAIDPIGQTHRYNAAFNRYVDLIKTVERAFG
Ga0209711_102358013	F076506	AGG	MVQRKEIRVMNIKDMNPVVNVGTNKNPLLVLCATTMMMMFEESTGKKYDSDNVEEYIQYCDGYRDGYNATAEGTKLIPMEESFI

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