Scaffold Ga0209246_10000328

Overview

Basic Information

• Taxon OID: 3300027785
• Scaffold ID: Ga0209246_10000328
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21082
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015997	Metagenome / Metatranscriptome	250	N
F060725	Metagenome	132	N
F073276	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209246_1000032813	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNILVRDLGWSTIEVSETTVKANYNPTTAEFCFILMKWKAWENETYILYNELTPAIFVWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPASFVYSAGNNGTVNITFTDETTSPNFDTGGNYTGGIYTVPINALYELIAELNVTLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNNSISLEFLGDLVANDTVKLRLRYENVTFNLSIAGSLSVVAEKEGLDTGEIVNLQYIIPISWYARDIISDLTTIFNLAWETDVLNRQVYAYPKDDYTIRYKANSTGAASLTSFEGFFKGTNKYDLNIRDIDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFEKGIEFIYTNFFAKAIHINDVAITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYSTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVNTHYDGANYEVVVNGVTKG
Ga0209246_1000032816	F073276	N/A	MSLVQLANIFEAATDAVPGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAYAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFNISIKSEC
Ga0209246_100003282	F015997	N/A	MSQLIQPSEVIAGGIARPTPADIRLDKTLISPHIQDAEFRWIVPAIGLTLYDAMVAQKGTSTAFTSAVYQQLWDKQLKSFCANAVLYEATPYMVMQLGSNGLYTLDNEYGQNVGVEGLKFYQDTLLQRLDVKKKRIKDFLCSCATSYAAFIPSAIGCPDATCYGDEEEQILDIYNTMGIV