Basic Information | |
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Taxon OID | 3300027782 Open in IMG/M |
Scaffold ID | Ga0209500_10021322 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3766 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014726 | Metagenome / Metatranscriptome | 260 | Y |
F016141 | Metagenome / Metatranscriptome | 249 | Y |
F024095 | Metagenome / Metatranscriptome | 207 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209500_100213225 | F014726 | N/A | MGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYITYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQATIDTRALASDFLGGFVQAGVLRFSVGARPFATIVKPFQYAPPPGSPLDYDNTYVNQISAAPVPAAGAAQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFAVSLQFPSGIVPVLATNVVNDSTNPLKVGVILDGLLLRPV |
Ga0209500_100213226 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRSQKYDFCRLLAAGTSSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFATGTNFTYRGYTALLNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVQCPSGFGIDVQSLASSRTGNAAETQVPGTNWAARSDYRASAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTTNGTQTPSVELGLIFDGYVIRPSQ |
Ga0209500_100213227 | F024095 | GGCGG | MDNTNSLPFVYVVTSTLSAAVGATGSSTLIMQADSRFELMGIFGTGGVAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAANNIT |
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