NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10021322

Scaffold Ga0209500_10021322


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10021322 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3766
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100213225F014726N/AMGFQSESIISAASQKFGVIDYTRWQAIRWQWYSYITYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIASNDVDGFTRANQATIDTRALASDFLGGFVQAGVLRFSVGARPFATIVKPFQYAPPPGSPLDYDNTYVNQISAAPVPAAGAAQVVGVPWITQTKMRSNVYFVDPNILIEAEQQFAVSLQFPSGIVPVLATNVVNDSTNPLKVGVILDGLLLRPV
Ga0209500_100213226F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRSQKYDFCRLLAAGTSSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFATGTNFTYRGYTALLNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVQCPSGFGIDVQSLASSRTGNAAETQVPGTNWAARSDYRASAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTTNGTQTPSVELGLIFDGYVIRPSQ
Ga0209500_100213227F024095GGCGGMDNTNSLPFVYVVTSTLSAAVGATGSSTLIMQADSRFELMGIFGTGGVAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAAANNIT
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