Scaffold Ga0209500_10018029

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10018029
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4161
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002060	Metagenome / Metatranscriptome	597	Y
F010248	Metagenome / Metatranscriptome	306	Y
F017101	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100180295	F017101	N/A	MDNNEKRMTVLESIIQDVATALFQKWANALPPDQSTEENIANLNKNATESTYFVVKMFMDQFNEAADQLKAQPDEK
Ga0209500_100180296	F010248	AGGA	MRKSERIRLLEMEMLRMQFQIEYVSRAIDILLQESKLKGPDLDAGKWYTSKLNKDK
Ga0209500_100180299	F002060	N/A	MESSAIIIAICAAILSGMGTAIVAGIRDNAKEKNRRVERDQDHLKLDLKDLKIELYKIEKELTEWKDKYYNALQELIGIRAELEESLMQLAHYEHHSDELDTEF