Scaffold Ga0209500_10015417

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10015417
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4570
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F042869	Metagenome	157	Y
F057982	Metagenome	135	N
F096622	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1001541710	F057982	AGGAG	MRYRITYSNGNYADWDSMQKELAWAYKWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITKERT
Ga0209500_1001541714	F011292	AGGAG	MTPQSFDIDTCKEVVGDARMRTIEAKARQDADNGVMDAPAMAKGTYWDGVYSYMEYVVYVTAHHKRMERIQRMKEKNT
Ga0209500_1001541715	F042869	AGGGGG	MNTLIGKEDTIKNHVPIGSLELKLAVARAEGYAIRVDETRYHHIVDGKVVTSVDESKPKYYYYNDRPLPMLDPYRIAMEFYLKEKT
Ga0209500_1001541716	F019438	GGAGG	METILATIILGFIGFMVGGLVFFGLVHLWFWMDENERGDR
Ga0209500_100154177	F096622	GAGG	MSKWDSHRGKGNTAFNALAQASDVANMTREHHTWMHSRGKLCWKCQKQSVPEKGCIINLQTGLHKYVCKPCVDARSAKATL