NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10005970

Scaffold Ga0209500_10005970


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10005970 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7869
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F001739Metagenome643Y
F002933Metagenome / Metatranscriptome519Y
F047558Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000597012F000332GGAMRWFLLLLLLGLVGAVAKSGCHVREFYGIGYTVHDPTQRHIEMMAWLNQNEQHCKSSEYVVIWNNLAEWAGSADSTWLRNKVVHGYKEALEREKK
Ga0209500_1000597013F002933GAGMIPPLYKWYPMVQPEGYPTKTDALERRAEKLTEDYKQALKMKKLDIKIDALEFELYVKKAERNQLSLEIFTNRKIDILA
Ga0209500_1000597014F047558N/AMVTKKPPAKVAPVKRRTPKPKSEQTINVSVAAPASKPEAKKDDSAIGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAQRLQKDLEAETVLVHKVTLVVNSRVTLLAYGSKGRETMLDGYNSTLFGKDAARNSAVIAMMNGEVYCDKLVASGKTSEWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPSDLGAVKTRINLAATEMAK
Ga0209500_100059706F001739GAGGMTTFTTRITAMFTLQQPDPNYVVNALWEVTGVDGTNTASIGGNTQFNSADQETAFVPYDQLTESVVIGWIPASQIGSAQACVQGQIDSMITPPVSPQNTPLPWA
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