Scaffold Ga0209500_10004559

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10004559
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9150
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008184	Metagenome / Metatranscriptome	337	Y
F016261	Metagenome / Metatranscriptome	248	N
F083920	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100045591	F008184	GGTGG	VPAPYTDLLNEALDDLTATLTAVTGLRVVNDPTRLVPNCVYIQALSFTTIAGNGNIVRVDFPIKVVGSGPAGLPVLREILQISA
Ga0209500_100045592	F083920	GGCGG	MATYLTASKQLLNNYACISTLEPTDIQVGDSIVVASIAAPFNGTFTVLSCPQYEYTGIDSTTGEWLFNENVPRANQVLYACTGSAVEYSAFYTGTVSFTPTCTWVTVANLVTYLGVSITNPSDDYTLATQAVSAGNQFCSRRRAEAGYNDSLSTSPSGDVTLGCLMYCAALWRSRGSLENVFASFDNMGTAPQQSMTPIVKQLLGIDRPAVA
Ga0209500_100045599	F016261	AGG	MTENIDPRTDPQFQALKHVMDEITQNKVPIRQPWELAARSTLRAIQHEIDDRNVLDDAELIDVLNQTRIEIKYLLSIITDLDERVKERDAEVSRLERWAHRAN