Scaffold Ga0209500_10003111

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10003111
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11504
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034151	Metagenome / Metatranscriptome	175	Y
F044442	Metagenome / Metatranscriptome	154	Y
F058810	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000311115	F058810	AGGAG	MLQALNTSIDTISGAKTQFVKTFVQNDEVAKQLQTFIDAQQSFAKTVAKTTVDFFTTLSTSATSFDSKKAFAKK
Ga0209500_1000311118	F034151	N/A	MKAKLSPNMISFVAVRRGDWVLKISVYKNKQILVMALNCYDFRTVVNYFTDQNCAADFIEQLVIED
Ga0209500_100031113	F044442	AGGA	MLKFANLTLSQKRFVVTVIESNKQYKKDPQITLKECAAIYYTIRDQRTGAKGEKIGYPNWLFNKNKVERGVYQLPIPTDTELSAYAKELAEKNTPKVAKAKAKVVKLAKAKTVKVKAPATTAVAKEDKMEVSRLQKIVDESADFSDDAEDFNAILRENGITV