Scaffold Ga0209500_10000828

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000828
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25132
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020647	Metagenome / Metatranscriptome	222	Y
F020689	Metagenome	222	Y
F026879	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000082827	F020647	GGAG	MFETCAKQLVTITLNKSVTTEFYNGTLFVSTITEDQARSVFHALSKSLGLGKVQVSPIGDTGEFAYDFV
Ga0209500_100008285	F026879	AGGAG	MLRQLAVISLLSSSLALAQDLPKELYMPNESGGYIILTTDACPNTDAAKLGYKYRAYATESDSEKPATHEGCWDSPSTTDAPKLQGMRIIPLVNLWFNGDMVTFPQTMFGPEKKRWDIILPTIEVKPNV
Ga0209500_100008289	F020689	GAG	MNDEQENRLVMMKDNQVKNLLASLAIAAVGCLAYWAYDAQVRVDEYNVKVVSLTETIQAITAKQLADQESNLKDVEENKLVDDRVKVLEATVQSQQAAIDELTARLTKKKK